PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 359aa    MW: 39890.1 Da    PI: 7.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1414genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14181227455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++N++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gh_A02G1414 181 DHIMAERKRREKLNQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                  699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-18181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18181239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-14182231No hitNo description
SMARTSM003531.6E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYDII HQCHMNSLAE LTPGEYITAT VLTGGNFKQS SFSSESYSSY  60
PNFNTKNNSV SSINEASDRP IKQLKTGTSW NSSTTTNIDH VPVPKKPSSP SSHILSFEKP  120
AASLPANSKQ LYGIDNIVKP KDETVCLGNN MNYFGPFQST NYTAKNSRSY SMTRSPSHAQ  180
DHIMAERKRR EKLNQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERL KVLEEQTKKR  240
TVESVVFVKK SQLLSADDES SSCEENSDGQ SSDVALPEIE AKVSDNDVLI RIHCEKHKGF  300
IAKILSEIEN LHVSIVNTNA LPFGNSTLDI TIIAQKDAEF NMTVKDLVKD LRMALLKFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472591.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0B0MNY90.0A0A0B0MNY9_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-72bHLH family protein